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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SO_3101Putative outer membrane protein of unknown function DUF541. (238 aa)    
Predicted Functional Partners:
fliG
Flagellar motor switching and energizing component FliG; FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation.
   
   0.529
pomB
Stator-force generator of Na+ coupled flagellar motor PomB.
    
   0.491
flgG
Flagellar component of cell-distal portion of basal-body rod FlgG; Belongs to the flagella basal body rod proteins family.
    
   0.491
SO_3100
Uncharacterized protein.
       0.469
SO_3102
Thiophosphate efflux pump MFP component; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
    0.454
SO_4403
Lipopotein of unknown function DUF2959.
  
    0.447
SO_3104
Inner membrane protein of unknown function DUF2892.
  
    0.427
yeeZ
NAD-dependent enzyme of unknown function YeeZ.
   
   0.418
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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