Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
sapSHExtracellular serine alkaline protease SapSH. (807 aa)    
Predicted Functional Partners:
SO_1915
Extracellular serine protease subtilase family; Belongs to the peptidase S8 family.
  
  
 0.972
SO_3545
Outer membrane porin; Belongs to the outer membrane OOP (TC 1.B.6) superfamily.
     
 0.970
degQ
Periplasmic serine protease DegQ; Belongs to the peptidase S1C family.
   
  
 0.813
argP
Arginine/lysine-responsive transcriptional regulator ArgP; Belongs to the LysR transcriptional regulatory family.
      
 0.796
SO_0189
Bifunctional autotransporter / adhesin cadherin family.
 
 
 0.753
SO_0440
ImpA-like cell surface immunomodulating metalloprotease.
 
 
 0.750
SO_0639
Collagenase.
 
  
 0.725
SO_1949
Invasin domain protein.
  
 
 0.714
SO_1872
Surface lipoprotein with VCBS repeats.
  
 
 0.708
SO_4080
Outer membrane lipoprotein intimin-like protein.
  
 
 0.708
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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