Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
SO_3124Dual specificity protein-tyrosine phosphatase. (156 aa)    
Predicted Functional Partners:
SO_1064
WD-40 repeat lipoprotein.
   
 0.872
kdkA
3-deoxy-D-manno-oct-2-ulosonic acid (KDO) kinase KdkA; Catalyzes the ATP-dependent phosphorylation of the 3-deoxy-D- manno-octulosonic acid (Kdo) residue in Kdo-lipid IV(A) at the 4-OH position; Belongs to the protein kinase superfamily. KdkA/RfaP family.
    
 0.857
SO_0497
Serine/threonine protein kinase.
  
  
 0.788
SO_0404
Zinc dependent metalloprotease domain lipoprotein.
  
     0.769
SO_0939
Split-soret diheme cytochrome c.
  
     0.721
SO_1505
Proton:peptide symporter POT family.
  
    0.705
SO_4539
Extracellular peptidase family S8; Belongs to the peptidase S8 family.
  
    0.691
mtrB
Extracellular iron oxide respiratory system outer membrane component MtrB.
  
     0.688
mdh
NAD dependent malate dehydrogenase Mdh; Catalyzes the reversible oxidation of malate to oxaloacetate.
    
 
 0.683
SO_3125
ATP-dependent RNA helicase DEAD box family; Belongs to the DEAD box helicase family.
  
   0.638
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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