STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SO_3128ABC-type metal export system bifunctional ATPase and permease component. (609 aa)    
Predicted Functional Partners:
SO_3885
AAA ATPase family protein; Belongs to the AAA ATPase family.
 
 0.643
SO_3611
AAA ATPase family protein.
  
 0.583
SO_4146
Type I secretion system ATPase subunit HlyB family.
 
 
0.566
SO_4147
Type I secretion system ATPase and inner membrane subunit HlyB family.
   
 
0.558
aggC
Type I protein secretion system bifunctional ATPase and permease component AggC.
   
 
0.558
atmA
ABC-type Ni2+/Co2+ export system bifunctional ATPase and permease components AtmA.
  
0.553
SO_3127
Multifunctional transcriptional regulator of DNA repair AraC family/ DNA glycosylase / 8-oxoguanine DNA glycosylase.
  
    0.516
ybbA
Putative ABC-type fatty acid export system ATPase component YbbA.
 
 
   
0.514
pfaA
Omega-3 polyunsaturated fatty acid synthase subunit PfaA.
  
 
 0.505
nfuA
Iron-sulfur cluster biogenesis scaffold protein NfuA; Involved in iron-sulfur cluster biogenesis. Binds a 4Fe-4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe/S proteins. Could also act as a scaffold/chaperone for damaged Fe/S proteins.
  
 
 0.495
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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