STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dctPTRAP-type C4-dicarboxylate:H+ symport system substrate-binding component DctP. (339 aa)    
Predicted Functional Partners:
dctQ
TRAP-type C4-dicarboxylate:H+ symport system small permease component DctQ.
 
  
 0.977
dctM
TRAP-type C4-dicarboxylate:H+ symport system large permease component DctM.
  
 0.965
frdB
Quinol:fumarate reductase FeS subunit FrdB.
   
  
 0.900
nqrA-2
Na-translocating NADH-quinone reductase subunit A NqrA; NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol.
      
 0.780
fdnH
Nitrate-inducible formate dehydrogenase iron-sulfur subunit FdnH; The beta chain is an electron transfer unit containing 4 cysteine clusters involved in the formation of iron-sulfur centers.
      
 0.734
SO_3545
Outer membrane porin; Belongs to the outer membrane OOP (TC 1.B.6) superfamily.
      
 0.720
tupA
ABC-type tungstate uptake system substrate-binding component TupA.
      
 0.719
argF
Ornithine carbamoyltransferase ArgF; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. OTCase family.
      
 0.565
SO_0455
Alpha-ketoglutarate uptake system bifunctional large and small subunit permease component.
  
     0.563
frdC-2
Quinol:fumarate reductase menaquinol-oxidizing subunit FrdC.
      
 0.525
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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