STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dctDTwo-component system, NtrC family, C4-dicarboxylate transport response regulator DctD; C4-dicarboxylate-responsive two component Sigma54-dependent signal transduction system response regulator DctD. (459 aa)    
Predicted Functional Partners:
rpoN
RNA polymerase sigma-54 factor RpoN; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
   
 0.788
rstB
Two component signal transduction system histidine kinase RstB.
  
 
 0.710
flrB
Two-component system, sensor histidine kinase FlrB; Two component signal transduction system controlling flagellar biosynthesis histidine kinase with PAS sensory domain FlrB.
 
 0.704
glnL
Nitrogen-responsive two component signal transduction system histidine kinase with PAS sensory domain GlnL.
 
 0.660
kdpD
Two component signal transduction system controlling the osmosenstive K+ channel histidine kinase KdpD.
 
 
 0.629
barA
Histidine kinase; Two component signal transduction system hybrid histidine kinase/response regulator with DUF2222 and Hpt domains BarA.
  
 
 0.611
SO_0859
Histidine kinase; Two component signal transduction system hybrid histidine kinase/response regulator with PAS sensory domain.
  
 
 0.610
qseC
AI-3-responsive two component signal transduction system histidine kinase QseC.
   
 
 0.602
rstA
Two component signal transduction system controlling curli production response regulator RstA.
  
 
 
 0.598
fliM
Flagellar motor switching and energizing component FliM; FliM is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation.
  
  
 0.588
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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