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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SO_3146DNA-binding protein H-NS family; Belongs to the histone-like protein H-NS family. (130 aa)    
Predicted Functional Partners:
intA
CP4-57-like prophage integrase IntA; Belongs to the 'phage' integrase family.
      
 0.837
alpA
Mu phage lytic protein AlpA.
      
 0.740
xis
Lambda phage DNA excisionase Xis.
      
 0.738
syd
SecY binding protein Syd; Interacts with the SecY protein in vivo. May bind preferentially to an uncomplexed state of SecY, thus functioning either as a chelating agent for excess SecY in the cell or as a regulatory factor that negatively controls the translocase function. Belongs to the Syd family.
  
  
 0.603
slyX
Functionally uncharacterized protein SlyX; Belongs to the SlyX family.
  
     0.592
SO_1458
P-loop ATPase superfamily protein.
      
 0.572
SO_1459
Concanavalin A-like lectin/glucanase domain protein.
      
 0.572
SO_1440
Bifunctional toxin-antitoxin system HepN family antidote fused to MNT family toxin.
      
 0.570
SO_1445
Transcriptional regulator CopG family.
      
 0.560
SO_1444
Toxin module of toxin-antitoxin system RelE/StbE family.
      
 0.557
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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