STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
wbfDPolysaccharide biosynthesis lipoprotein WbfD. (236 aa)    
Predicted Functional Partners:
wbfC
Polysaccharide synthesis-related protein of unknown function DUF1017 WbfC.
 
  
 0.975
wbfB
Outer membrane protein of unknown function DUF940 WbfB.
 
  
 0.973
wza
Outer membrane polysaccharide export channel protein Wza.
 
  
 0.660
yebG
UV induced SOS regulon protein YebG.
  
     0.535
yejL
Protein of unknown function DUF1414 YejL; Belongs to the UPF0352 family.
  
    0.497
SO_1712
Transcriptional regulator.
  
     0.479
SO_4798
Low complexity protein of unknown function.
       0.476
cpxP
Periplasmic stress adaptor protein CpxP.
  
     0.441
SO_2840
Protein of unknown function DUF45.
  
     0.401
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.