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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
wbfCPolysaccharide synthesis-related protein of unknown function DUF1017 WbfC. (261 aa)    
Predicted Functional Partners:
wbfB
Outer membrane protein of unknown function DUF940 WbfB.
 
    0.968
wbfD
Polysaccharide biosynthesis lipoprotein WbfD.
 
  
 0.967
SO_3866
Site-specific recombinase phage integrase family; Belongs to the 'phage' integrase family.
  
     0.601
yebG
UV induced SOS regulon protein YebG.
  
     0.549
yejL
Protein of unknown function DUF1414 YejL; Belongs to the UPF0352 family.
  
    0.540
cpxP
Periplasmic stress adaptor protein CpxP.
  
     0.526
wcvB
UDP-glucose dehydrogenase WcvB.
   
    0.503
SO_4798
Low complexity protein of unknown function.
       0.467
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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