STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
wbfUGalactosyl transferase WbfU. (185 aa)    
Predicted Functional Partners:
SO_3173
NAD-dependent epimerase/dehydratase family protein.
  
 0.992
SO_3174
O-antigen biosynthesis glycosyl transferase family 4.
  
 0.985
wbfY
Polysaccharide biosynthesis protein epimerase/dehydratase-like WbfY.
  
 0.969
wza
Outer membrane polysaccharide export channel protein Wza.
 
  
 0.948
wzy
O-antigen polymerase Wzy.
     
 0.931
SO_3177
Formyltransferase domain protein.
     
 0.923
wbnI
Glycosyl transferase family 2 WbnI.
 
  
 0.843
SO_3176
O-antigen biosynthesis glycosyl transferase family 4.
 
  
 0.842
wzx
O-antigen flippase Wzx.
 
  
 0.841
pseB
Bifunctional UDP GlcNAc C6 dehydratase/C5 epimerase PseB.
  
 0.804
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.