Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SO_3176O-antigen biosynthesis glycosyl transferase family 4. (373 aa)    
Predicted Functional Partners:
SO_3174
O-antigen biosynthesis glycosyl transferase family 4.
    0.974
wbpQ
Asparagine synthase glutamine-hydrolyzing WbpQ.
 
  
 0.913
wbfU
Galactosyl transferase WbfU.
 
  
 0.842
rmlA
Glucose-1-phosphate-thymidylyltransferase RmlA; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family.
  
  
 0.778
wzx
O-antigen flippase Wzx.
  
  
 0.775
SO_3178
Polysaccharide deacetylase.
 
  
 0.769
wbnI
Glycosyl transferase family 2 WbnI.
 
  
 0.763
SO_3177
Formyltransferase domain protein.
 
   
 0.729
SO_4682
Glycosyl transferase family 4.
  
     0.707
wbpA
UDP-N-acetyl-d-glucosamine 6-dehydrogenase WbpA; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.
 
  
 0.688
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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