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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SO_3177Formyltransferase domain protein. (253 aa)    
Predicted Functional Partners:
rsmB
16S rRNA (cytosine967-C5)-methyltransferase RsmB; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.
  
  
 0.964
wzy
O-antigen polymerase Wzy.
     
 0.917
wbfU
Galactosyl transferase WbfU.
  
  
 0.913
SO_3178
Polysaccharide deacetylase.
 
  
 0.902
wbfY
Polysaccharide biosynthesis protein epimerase/dehydratase-like WbfY.
  
  
 0.800
wzx
O-antigen flippase Wzx.
 
   
 0.790
wbnI
Glycosyl transferase family 2 WbnI.
  
  
 0.771
SO_3183
Perosamine synthetase-related protein; Belongs to the DegT/DnrJ/EryC1 family.
  
  
 0.768
SO_3185
Enzyme for biosynthesis of dTDP-Qui4N; Belongs to the DegT/DnrJ/EryC1 family.
  
  
 0.768
wbpQ
Asparagine synthase glutamine-hydrolyzing WbpQ.
 
  
 0.745
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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