STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SO_3183Perosamine synthetase-related protein; Belongs to the DegT/DnrJ/EryC1 family. (316 aa)    
Predicted Functional Partners:
wbnH
O-antigen biosynthesis acetyltransferase WbnH.
 
 
 0.976
wbnI
Glycosyl transferase family 2 WbnI.
  
  
 0.958
wbnJ
O-antigen biosynthesis acetyltransferase WbnJ.
  
  
 0.948
SO_3185
Enzyme for biosynthesis of dTDP-Qui4N; Belongs to the DegT/DnrJ/EryC1 family.
 
    0.929
wbpQ
Asparagine synthase glutamine-hydrolyzing WbpQ.
  
  
 0.913
wzy
O-antigen polymerase Wzy.
  
  
 0.913
wbpA
UDP-N-acetyl-d-glucosamine 6-dehydrogenase WbpA; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.
 
  
 0.876
rmlA
Glucose-1-phosphate-thymidylyltransferase RmlA; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family.
  
  
 0.871
wbqC
Putative glycine transferase in O-antigen biosynthesis cluster WbqC.
 
    0.840
wzx
O-antigen flippase Wzx.
  
  
 0.802
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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