Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
wzzPolysaccharide chain length determinant Wzz. (329 aa)    
Predicted Functional Partners:
wza
Outer membrane polysaccharide export channel protein Wza.
 
 
 0.992
wbpA
UDP-N-acetyl-d-glucosamine 6-dehydrogenase WbpA; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.
  
  
 0.925
SO_4685
Outer membrane protein in capsule/EPS biosynthesis locus.
 
  
 0.795
wzd
Uncharacterized protein.
  
  
 0.736
SO_4705
Transcriptional repressor Xre family.
  
     0.707
wbpP
UDP-GlkcNAc C4 epimerase WbpP.
  
  
 0.636
wbfU
Galactosyl transferase WbfU.
  
  
 0.587
wbnJ
O-antigen biosynthesis acetyltransferase WbnJ.
  
  
 0.570
SO_2183
LD-transpeptidase ErfK/YbiS/YcfS/YnhG family.
  
   
 0.562
SO_2225
Carboxypeptidase-like protein.
   
  
 0.534
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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