STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
wzdUncharacterized protein. (117 aa)    
Predicted Functional Partners:
SO_4685
Outer membrane protein in capsule/EPS biosynthesis locus.
      
 0.882
SO_2183
LD-transpeptidase ErfK/YbiS/YcfS/YnhG family.
   
  
 0.881
wzz
Polysaccharide chain length determinant Wzz.
  
  
 0.736
wza
Outer membrane polysaccharide export channel protein Wza.
 
     0.555
SO_2803
DNA internalization-related competance protein ComEC/Rec2 family.
 
  
 0.542
wbpP
UDP-GlkcNAc C4 epimerase WbpP.
     
 0.522
tnpA-138
ISSod4 transposase TnpA_ISSod4.
      
 0.512
SO_2225
Carboxypeptidase-like protein.
  
  
 0.511
SO_0456
Alpha-ketoglutarate uptake system substrate-binding component.
      
 0.492
SO_4279
Tellurium ion resistance family protein.
      
 0.492
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.