STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
wzdUncharacterized protein. (117 aa)    
Predicted Functional Partners:
wza
Outer membrane polysaccharide export channel protein Wza.
 
     0.559
gspJ
T2aSS secretion system protein GspJ.
  
 
 0.550
SO_2803
DNA internalization-related competance protein ComEC/Rec2 family.
 
  
 0.550
gspK
T2aSS secretion system pseudopilus protein GspK.
  
 
 0.511
mshE
MSHA pilus assembly ATPase MshE.
  
 
 0.508
gspE
T2aSS secretion system assembly ATPase GspE; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
  
 
 0.499
pilB
Type IV pilus assembly ATPase PilB.
  
 
 0.499
wzz
Polysaccharide chain length determinant Wzz.
  
  
 0.480
gspF
T2aSS secretion system inner membrane platform protein GspF.
  
  
 0.460
pilC
Type IV pilus inner membrane protein PilC.
  
  
 0.460
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.