Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
wzaOuter membrane polysaccharide export channel protein Wza. (921 aa)    
Predicted Functional Partners:
wzz
Polysaccharide chain length determinant Wzz.
 
 
 0.992
wbfU
Galactosyl transferase WbfU.
 
  
 0.948
wzx
O-antigen flippase Wzx.
 
  
 0.942
apbC
Scaffold protein for [4Fe-4S] cluster assembly ApbC; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family.
  
 
 0.805
SO_4685
Outer membrane protein in capsule/EPS biosynthesis locus.
 
  
 0.760
SO_0587
Glycerophosphodiester phosphodiesterase.
     
 0.673
wbfD
Polysaccharide biosynthesis lipoprotein WbfD.
 
  
 0.660
ptpA
Low molecular weight phosphotyrosine protein phosphatase PtpA.
  
  
 0.643
wbfB
Outer membrane protein of unknown function DUF940 WbfB.
 
  
 0.638
wbfY
Polysaccharide biosynthesis protein epimerase/dehydratase-like WbfY.
  
  
 0.593
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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