Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
SO_3260Uncharacterized protein. (89 aa)    
Predicted Functional Partners:
maf
Motility accessory factor Maf.
     
 0.971
SO_3262
TPP-dependent enzyme involved in flagella modificaiton.
     
 0.957
SO_3263
3-oxoacyl-(acyl-carrier-protein) reductase.
     
 0.957
SO_3261
Polysaccharide biosynthesis related-protein.
     
 0.954
SO_3265
Uncharacterized protein.
     
 0.952
SO_3264
SAM-dependent methyltransferase in polysaccharide biosynthesis locus.
     
 0.920
fliA
RNA polymerase sigma-28 factor for flagellar operon FliA; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor controls the expression of flagella-related genes; Belongs to the sigma-70 factor family. FliA subfamily.
      
 0.461
flgT
Flagella assembly protein FlgT.
       0.456
SO_3273
Motility accessory factor Maf family.
   
  
 0.403
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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