STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SO_3261Polysaccharide biosynthesis related-protein. (290 aa)    
Predicted Functional Partners:
SO_3265
Uncharacterized protein.
 
   
 0.985
SO_3262
TPP-dependent enzyme involved in flagella modificaiton.
     
 0.982
SO_3263
3-oxoacyl-(acyl-carrier-protein) reductase.
     
 0.981
maf
Motility accessory factor Maf.
 
   
 0.972
SO_3264
SAM-dependent methyltransferase in polysaccharide biosynthesis locus.
 
   
 0.965
SO_3260
Uncharacterized protein.
     
 0.954
SO_3269
Flagellin modification protein.
 
  
 0.920
pseB
Bifunctional UDP GlcNAc C6 dehydratase/C5 epimerase PseB.
 
  
 0.888
pseC
C4 aminotransferase for PseB product PseC; Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.874
kdsC
3-deoxy-manno-octulosonate-8-phosphatase KdsC; Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8- phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate; Belongs to the KdsC family.
   
 0.689
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.