STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SO_3269Flagellin modification protein. (574 aa)    
Predicted Functional Partners:
SO_3261
Polysaccharide biosynthesis related-protein.
 
  
 0.918
pseC
C4 aminotransferase for PseB product PseC; Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.806
pseB
Bifunctional UDP GlcNAc C6 dehydratase/C5 epimerase PseB.
 
   
 0.794
SO_3268
Flagellin modification glycoside hydrolase family 57.
       0.788
SO_3267
SAM-dependent methyltransferase.
 
     0.674
flgC
Flagellar basal-body rod protein FlgC; Belongs to the flagella basal body rod proteins family.
   
    0.580
rmlA
Glucose-1-phosphate-thymidylyltransferase RmlA; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family.
  
    0.518
SO_3185
Enzyme for biosynthesis of dTDP-Qui4N; Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.514
flgM
Flagellar biosynthesis anti-sigma factor FlgM.
  
    0.484
maf
Motility accessory factor Maf.
 
     0.478
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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