Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SO_3273Motility accessory factor Maf family. (822 aa)    
Predicted Functional Partners:
SO_1371
RDD family protein.
   
  
 0.807
SO_1071
Membrane protein of unknown function UPF0016.
   
  
 0.805
SO_1916
DMSO-responsive transcriptional activator of efflux pump LysR family; Belongs to the LysR transcriptional regulatory family.
   
  
 0.805
SO_1333
4-toluene sulfonate uptake permease family protein.
      
 0.802
SO_2650
Uncharacterized protein.
      
 0.802
pseC
C4 aminotransferase for PseB product PseC; Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.790
pseB
Bifunctional UDP GlcNAc C6 dehydratase/C5 epimerase PseB.
     
 0.768
aguA
Agmatine deiminase AguA.
      
 0.662
SO_2583
Methyltransferase.
      
 0.662
SO_3261
Polysaccharide biosynthesis related-protein.
 
   
 0.650
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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