STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SO_3280Protein of unknown function DUF465. (81 aa)    
Predicted Functional Partners:
SO_3662
Inner membrane 4Fe-4S ferredoxin.
  
    0.644
ccoG
Cbb3-type cytochrome oxidase assembly protein CcoG.
  
    0.644
SO_1306
Protein of unknown function DUF2750.
  
     0.641
SO_1148
Endonuclease/exonuclease/phosphatase family protein.
  
     0.591
ccoQ
Cbb3-type cytochrome c oxidase subunit IV CcoQ.
   
    0.507
ccoO
Cbb3-type cytochrome c oxidase subunit II CcoO.
  
    0.492
ccoN
Cbb3-type cytochrome c oxidase subunit I CcoN; Belongs to the heme-copper respiratory oxidase family.
  
    0.472
ompW
Outer membrane protein OmpW.
   
    0.466
hemN
Coproporphyrinogen III oxidase oxygen-independent HemN; Belongs to the anaerobic coproporphyrinogen-III oxidase family.
  
    0.450
SO_3282
Energy taxis modulating methyl accepting sensory transducer.
       0.432
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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