STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SO_3298Outer membrane beta barrel protein. (374 aa)    
Predicted Functional Partners:
mtrB
Extracellular iron oxide respiratory system outer membrane component MtrB.
      
 0.862
mtrA
Extracelllular iron oxide respiratory system periplasmic decaheme cytochrome c component MtrA.
   
  
 0.810
SO_3549
Hemerythrin.
      
 0.735
cymA
Membrane anchored tetraheme cytochrome c CymA.
   
  
 0.672
mtrC
Extracellular iron oxide respiratory system surface decaheme cytochrome c component MtrC.
      
 0.666
bamE
Beta barrel protein translocation component BamE; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
      
 0.663
mlaA
Phospholipid transport-associated protein MlaA.
   
  
 0.663
mlaC
ABC-type phospholipid uptake (salvage) system periplasmic chaperone MlaC.
      
 0.662
gpM
Mu phage tail tube protein GpM.
      
 0.661
deoT
Nucleoside sugar transporter DeoT.
   
    0.602
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.