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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SO_3298Outer membrane beta barrel protein. (374 aa)    
Predicted Functional Partners:
mtrB
Extracellular iron oxide respiratory system outer membrane component MtrB.
      
 0.823
mtrA
Extracelllular iron oxide respiratory system periplasmic decaheme cytochrome c component MtrA.
   
  
 0.790
SO_3549
Hemerythrin.
      
 0.730
mtrC
Extracellular iron oxide respiratory system surface decaheme cytochrome c component MtrC.
      
 0.651
deoT
Nucleoside sugar transporter DeoT.
   
    0.608
gpM
Mu phage tail tube protein GpM.
   
  
 0.584
SO_3297
Transcriptional regulator LysR family; Belongs to the LysR transcriptional regulatory family.
  
    0.575
omcA
Extracelllular iron oxide respiratory system surface decaheme cytochrome c component OmcA.
      
 0.566
SO_0017
Bifunctional TolB-family protein/amidohydrolase.
  
     0.538
SO_1977
Inner membrane of unknown function DUF307.
   
  
 0.530
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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