STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SO_3299Phenylalanine/histidine ammonia-lyase family protein. (549 aa)    
Predicted Functional Partners:
hutU
Urocanate hydratase HutU; Catalyzes the conversion of urocanate to 4-imidazolone-5- propionate.
 
 
 0.965
hutI
Imidazolonepropionase HutI; Belongs to the metallo-dependent hydrolases superfamily. HutI family.
 
  
 0.896
SO_0017
Bifunctional TolB-family protein/amidohydrolase.
  
  
 0.564
hexB
beta-N-acetylhexosaminidase HexB.
   
    0.564
hutG
Formimidoylglutamase HutG; Belongs to the arginase family.
  
  
 0.561
SO_3148
Periplasmic amidohydrolase family protein.
  
  
 0.560
SO_3149
Periplasmic amidohydrolase family protein.
  
  
 0.560
SO_3301
Flavocytochrome c flavin subunit; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily.
  
    0.541
SO_3300
Flavocytochrome c heme submit.
       0.531
SO_3298
Outer membrane beta barrel protein.
       0.483
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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