STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SO_3302Extracellular peptidase family S8A; Belongs to the peptidase S8 family. (1287 aa)    
Predicted Functional Partners:
SO_3303
Cell surface protein.
  
  
 0.817
SO_1241
Protein of unknown function DUF1568.
   
    0.608
SO_3305
Two component signal transduction system response regulator LuxR family.
  
    0.487
SO_3306
Two component signal transduction system hybrid histidine kinase.
  
    0.451
SO_0757
TPR domain lipoprotein.
 
    0.441
SO_4611
Aa3 type cytochrome c oxidase biogenesis protein Surf1-like protein.
  
   0.436
SO_3491
Cyclic di-GMP hydrolase.
   
    0.410
SO_0497
Serine/threonine protein kinase.
 
  
 0.408
SO_2902
RDD domain protein.
  
    0.402
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.