Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SO_3303Cell surface protein. (814 aa)    
Predicted Functional Partners:
SO_3302
Extracellular peptidase family S8A; Belongs to the peptidase S8 family.
  
    0.826
SO_2803
DNA internalization-related competance protein ComEC/Rec2 family.
  
  
 0.561
cooC
Type I pilus outer membrane usher porin CooC.
   
  
 0.500
SO_3305
Two component signal transduction system response regulator LuxR family.
  
  
 0.483
SO_3306
Two component signal transduction system hybrid histidine kinase.
  
    0.483
cooB
Type I pilus assembly chaperone CooB.
   
  
 0.483
lapA
Membrane protein of unknown function DUF1049; Involved in the assembly of lipopolysaccharide (LPS). Belongs to the LapA family.
      
 0.479
aggC
Type I protein secretion system bifunctional ATPase and permease component AggC.
  
  
 0.474
fklB
Peptidyl-prolyl cis-trans isomerase FklB.
      
 0.472
fklB-2
Peptidyl-prolyl cis-trans isomerase FklB.
      
 0.472
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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