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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SO_3303Cell surface protein. (814 aa)    
Predicted Functional Partners:
SO_3302
Extracellular peptidase family S8A; Belongs to the peptidase S8 family.
  
  
 0.817
SO_2803
DNA internalization-related competance protein ComEC/Rec2 family.
  
  
 0.554
lapA
Membrane protein of unknown function DUF1049; Involved in the assembly of lipopolysaccharide (LPS). Belongs to the LapA family.
      
 0.511
fliN
Flagellar motor switching and energizing component FliN; FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation. Belongs to the FliN/MopA/SpaO family.
   
 
 0.502
fklB-4
Peptidyl-prolyl cis-trans isomerase FklB.
   
  
 0.487
fklB
Peptidyl-prolyl cis-trans isomerase FklB.
   
  
 0.485
fklB-2
Peptidyl-prolyl cis-trans isomerase FklB.
      
 0.485
fklB-3
Peptidyl-prolyl cis-trans isomerase FklB.
      
 0.485
SO_3305
Two component signal transduction system response regulator LuxR family.
  
  
 0.484
SO_3306
Two component signal transduction system hybrid histidine kinase.
  
  
 0.480
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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