Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SO_3319Membrane protein DoxX family. (147 aa)    
Predicted Functional Partners:
SO_2009
Protein of unknown function DUF2063.
 
  
 0.647
SO_3318
Transcriptional regulator LysR family; Belongs to the LysR transcriptional regulatory family.
  
    0.524
SO_2008
Protein of unknown function DUF692; Belongs to the UPF0276 family.
  
  
 0.478
SO_1909
Catalytic subunit of aromatic ring-opening dioxygenase.
 
  
 0.470
deoR
Nucleoside-responsive transcriptional activator of nucleoside utilization DeoR.
   
    0.442
SO_4146
Type I secretion system ATPase subunit HlyB family.
   
    0.431
SO_2007
Putative periplasmic low complexity protein.
 
  
 0.425
SO_4542
Transcriptional regulator LysR family; Belongs to the LysR transcriptional regulatory family.
   
    0.421
selR
methionine-R-sulfoxide reductase SelR; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.
  
  
 0.412
mnmG
tRNA uridine 5-carboxymethylaminomethyl modification system MnmG; NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34; Belongs to the MnmG family.
    
 
 0.403
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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