STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SO_3331Protein with CobQ/CobB/MinD/ParA nucleotide binding domain. (260 aa)    
Predicted Functional Partners:
SO_3058
Flavocytochrome c flavin subunit; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily.
  
    0.867
SO_3332
Transcriptional regulator CopG family.
  
    0.778
parB
Chromosome partitioning protein ParB; Belongs to the ParB family.
  
 
 0.761
SO_4008
Putative recombination regulator protein DUF3584 family.
 
  
 0.608
SO_0680
Mu phage tape measure protein.
 
  
 0.586
SO_4006
Uncharacterized protein.
  
     0.521
SO_0667
Mu phage portal protein.
   
    0.516
yggT
Inner membrane osmoregulator protein YggT.
  
    0.500
flgO
Outer membrane lipoprotein required for flagellar motility FlgO.
  
    0.490
SO_1309
TonB-dependent receptor.
  
   0.487
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.