Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SO_3335Periplasmic protein of unknown function DUF980; Belongs to the MtfA family. (274 aa)    
Predicted Functional Partners:
SO_0660
Mu phage conserved phage protein.
   
    0.694
SO_3336
Predicted secreted protein.
  
    0.673
SO_1720
Membrane protein of unknown function DedA family.
  
  
 0.644
SO_3334
Diguanylate cyclase with HAMP domain.
  
    0.504
SO_3333
Periplasmic substrate binding protein family 1.
       0.503
queE
Queuosine biosynthesis radical activating enzyme QueE; Catalyzes the complex heterocyclic radical-mediated conversion of 6-carboxy-5,6,7,8-tetrahydropterin (CPH4) to 7-carboxy-7- deazaguanine (CDG), a step common to the biosynthetic pathways of all 7-deazapurine-containing compounds.
     
 0.486
SO_4051
Putative DUF2955 domain transport system MFP component.
  
    0.477
SO_3756
AFG1-family ATPase.
   
    0.429
SO_4191
Membrane protein of unknown function DedA family.
  
  
 0.424
SO_3331
Protein with CobQ/CobB/MinD/ParA nucleotide binding domain.
  
    0.407
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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