STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SO_3336Predicted secreted protein. (190 aa)    
Predicted Functional Partners:
SO_3335
Periplasmic protein of unknown function DUF980; Belongs to the MtfA family.
  
    0.670
SO_3025
Periplasmic siderophore cleavage esterase IroE family.
  
    0.474
SO_0017
Bifunctional TolB-family protein/amidohydrolase.
 
     0.472
SO_3275
Putative periplasmic protein.
  
     0.463
SO_3334
Diguanylate cyclase with HAMP domain.
  
    0.448
SO_3333
Periplasmic substrate binding protein family 1.
  
    0.443
SO_4466
Chemotaxis signal transduction system methyl accepting sensory transducer.
   
    0.443
SO_3298
Outer membrane beta barrel protein.
  
    0.407
SO_4461
Uncharacterized protein.
   
    0.400
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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