STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SO_3337Signal transduction protein with HDOD/GAF domains. (487 aa)    
Predicted Functional Partners:
SO_0013
Metal-dependent phosphohydrolase.
 
     0.717
SO_0859
Histidine kinase; Two component signal transduction system hybrid histidine kinase/response regulator with PAS sensory domain.
   
 
 0.579
SO_1254
Signal transduction superfamily protein with modified HD-GYP domain.
 
     0.570
flaG
Uncharacterized flagella locus protein FlaG.
 
     0.550
barA
Histidine kinase; Two component signal transduction system hybrid histidine kinase/response regulator with DUF2222 and Hpt domains BarA.
   
 
 0.542
SO_2538
Two component signal transduction system response regulator.
 
    0.537
SO_4002
Two component signal transduction system hybrid histidine kinase/response regulator with PAS sensory domain.
   
 
 0.533
SO_2119
Protein phosphatase with response regulator reciever modulation.
 
  
 0.508
cheC
Chemotaxis signal transduction system inhibitor of MCP methylation CheC.
 
    0.497
pilP
PilQ chaperone PilP.
  
    0.492
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.