STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SO_3339Outer membrane porin OmpA family. (196 aa)    
Predicted Functional Partners:
pdsO
Sortase system OmpA family protein PdsO.
  
  
  0.966
pomB
Stator-force generator of Na+ coupled flagellar motor PomB.
  
 0.959
motB
Stator-force generator of H+ coupled flagellar motor MotB.
  
0.934
yiaD
Putative outer membrane lipoprotein YiaD.
  
  
 
0.928
motY
Smf-dependent flagellar motor protein MotY.
  
    0.705
mscS
Small conductance mechanosensitive ion channel protein MscS.
  
    0.674
tolB
TonB biopolymer transport system periplasmic component TolB; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
  
 
 0.612
tpx
Thiol peroxidase Tpx; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides.
  
  
 0.531
skp
Periplasmic chaperone for outer membrane proteins Skp; Belongs to the skp family.
  
 
 0.524
fliF
Flagellar basal-body MS-ring and collar protein FliF; The M ring may be actively involved in energy transduction. Belongs to the FliF family.
   
 
 0.493
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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