STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pilUPilus retraction ATPase PilU. (370 aa)    
Predicted Functional Partners:
pilM
Type IV pilus biogenesis protein PilM.
  
  
 0.933
pilT
Pilus retraction protein PilT.
 
  
0.904
pilD
Type IV prepilin peptidase PilD; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
  
   
 0.896
pilQ
Type IV pilus secretin PilQ.
  
  
 0.889
pilC
Type IV pilus inner membrane protein PilC.
 
   
 0.870
pilO
Type IV pilus biogenesis protein PilO.
 
  
 0.847
pilN
Type IV pilus biogenesis protein PilN.
  
  
 0.830
mshG
MSHA biogenesis protein MshG.
 
   
 0.804
pilP
PilQ chaperone PilP.
  
   
 0.796
gspF
T2aSS secretion system inner membrane platform protein GspF.
 
  
 0.786
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.