STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yceJCytochrome B561 YceJ. (183 aa)    
Predicted Functional Partners:
yceI-2
UPF0312 family alkali-inducible periplasmic protein YceI.
 
  
 0.988
yceI
Base-induced periplasmic protein YceI; Belongs to the UPF0312 family.
 
  
 0.835
sye4
NAD(P)H:flavin oxidoreductase Sye4.
     
 0.720
fdnG
Nitrate-inducible formate dehydrogenase molybdopterin-binding subunit FdnG; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
      
 0.717
azoR
FMN-dependent NADH-azoreductase AzoR; Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity; Belongs to the azoreductase type 1 family.
   
  
 0.674
fdnI
Nitrate-inducible formate dehydrogenase cytochrome b subunit FdnI.
      
 0.637
chrR
anti-ECFsigma factor ChrR.
      
 0.570
fdnH
Nitrate-inducible formate dehydrogenase iron-sulfur subunit FdnH; The beta chain is an electron transfer unit containing 4 cysteine clusters involved in the formation of iron-sulfur centers.
   
  
 0.565
SO_1610
Zn-ribbon-containing possibly nucleic-acid-binding protein DUF2310.
   
    0.516
phrB
Deoxyribodipyrimidine photolyase PhrB; Belongs to the DNA photolyase family.
      
 0.508
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.