STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
yceJCytochrome B561 YceJ. (183 aa)    
Predicted Functional Partners:
yceI-2
UPF0312 family alkali-inducible periplasmic protein YceI.
 
  
 0.993
yceI
Base-induced periplasmic protein YceI; Belongs to the UPF0312 family.
 
  
 0.881
azoR
FMN-dependent NADH-azoreductase AzoR; Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity; Belongs to the azoreductase type 1 family.
   
  
 0.700
fdnG
Nitrate-inducible formate dehydrogenase molybdopterin-binding subunit FdnG; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
      
 0.696
sye4
NAD(P)H:flavin oxidoreductase Sye4.
     
 0.674
fdnI
Nitrate-inducible formate dehydrogenase cytochrome b subunit FdnI.
      
 0.667
fdnH
Nitrate-inducible formate dehydrogenase iron-sulfur subunit FdnH; The beta chain is an electron transfer unit containing 4 cysteine clusters involved in the formation of iron-sulfur centers.
   
  
 0.663
chrR
anti-ECFsigma factor ChrR.
      
 0.661
SO_1610
Zn-ribbon-containing possibly nucleic-acid-binding protein DUF2310.
   
    0.511
phrB
Deoxyribodipyrimidine photolyase PhrB; Belongs to the DNA photolyase family.
      
 0.491
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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