STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SO_3374Membrane protein of unknown function DUF3634. (114 aa)    
Predicted Functional Partners:
SO_1986
RNA polymerase sigma factor ECF family 11; Belongs to the sigma-70 factor family. ECF subfamily.
   
  
 0.812
SO_3386
Bifunctional protein of unknown functions DUF523 and DUF1722.
      
 0.806
SO_4169
Deoxyribodipyrimidine photolyase-related protein.
      
 0.806
SO_4170
Cell-cell signaling protein C-factor.
      
 0.806
SO_1987
ATP-dependent protease La (LON) domain protein.
      
 0.805
cfaS
Cyclopropane-fatty-acyl-phospholipid synthase CfaS.
      
 0.791
chrR
anti-ECFsigma factor ChrR.
   
  
 0.690
SO_3349
Periplasmic glutathione peroxidase; Belongs to the glutathione peroxidase family.
   
  
 0.665
SO_1563
Cytoplasmic glutathione peroxidase.
      
 0.664
phrB
Deoxyribodipyrimidine photolyase PhrB; Belongs to the DNA photolyase family.
      
 0.588
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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