STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SO_3380Protein of unknown function DUF1365. (263 aa)    
Predicted Functional Partners:
cfaS
Cyclopropane-fatty-acyl-phospholipid synthase CfaS.
  
 0.994
SO_3381
Amine oxidase.
  
 0.964
SO_3376
Predicted lipoprotein.
 
  
 0.960
SO_3383
Protein of unknown function DUF2358.
 
  
 0.952
SO_3382
Oxidoreductase short-chain dehydrogenase/reductase family.
 
  
 0.945
SO_3378
Membrane protein of unknown function DUF2878.
 
   
 0.913
SO_3377
Predicted periplasmic protein.
 
    0.841
phrB
Deoxyribodipyrimidine photolyase PhrB; Belongs to the DNA photolyase family.
 
     0.771
chrR
anti-ECFsigma factor ChrR.
 
  
 0.743
SO_3385
Transcriptional activator of singlet oxygen protection.
  
  
 0.695
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.