Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SO_3385Transcriptional activator of singlet oxygen protection. (345 aa)    
Predicted Functional Partners:
phrB
Deoxyribodipyrimidine photolyase PhrB; Belongs to the DNA photolyase family.
  
  
 0.927
SO_0456
Alpha-ketoglutarate uptake system substrate-binding component.
      
 0.885
SO_3386
Bifunctional protein of unknown functions DUF523 and DUF1722.
 
  
 0.885
mshJ
MSHA biogenesis protein MshJ.
      
 0.859
SO_3383
Protein of unknown function DUF2358.
 
  
 0.840
SO_4685
Outer membrane protein in capsule/EPS biosynthesis locus.
      
 0.831
SO_2183
LD-transpeptidase ErfK/YbiS/YcfS/YnhG family.
   
  
 0.813
SO_0625
Periplasmic cyctochrome c oxidase regulatory protein.
     
 0.811
SO_3382
Oxidoreductase short-chain dehydrogenase/reductase family.
 
  
 0.786
SO_3381
Amine oxidase.
 
  
 0.781
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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