STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SO_3406Putative siderophore transporter component 1. (122 aa)    
Predicted Functional Partners:
SO_3408
Putative siderophore transporter component 3.
  
    0.972
SO_3407
Putative siderophore transporter component 2.
  
    0.875
hmuA
TonB-dependent heme/hemoglobin receptor HmuA.
  
    0.844
hmuZ
FMN binding heme iron utilization protein HmuZ.
   
    0.793
SO_3409
OsmC/Ohr family protein.
  
    0.513
SO_1580
TonB-dependent haem/haemoglobin receptor.
  
    0.491
SO_2715
Thiamine-regulated TonB-dependent receptor.
  
    0.453
nicT
TonB-dependent nickel receptor NicT.
  
    0.439
SO_1156
TonB-dependent siderophore receptor.
  
    0.437
hmuX
Heme iron utilization protein HmuX.
   
    0.410
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.