STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SO_3407Putative siderophore transporter component 2. (559 aa)    
Predicted Functional Partners:
SO_3406
Putative siderophore transporter component 1.
  
    0.895
SO_3408
Putative siderophore transporter component 3.
  
    0.891
SO_0448
Iron-regulated inner membrane protein.
  
  
 0.826
SO_2736
Outer membrane protein protein of unknown function DUF3187.
      
 0.792
SO_1188
Inner membrane protein with PepSY TM helix.
 
  
 0.789
putA
TonB-dependent ferric putrebactin siderophore receptor PutA.
 
  
 0.776
SO_0449
Iron-regulated inner membrane protein.
  
  
0.616
SO_1482
TonB-dependent receptor.
 
  
 0.614
SO_3914
TonB-dependent siderophore receptor.
 
  
 0.579
SO_2523
TonB-dependent phytase receptor.
 
   
 0.556
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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