Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SO_3411Predicted non-catalytic member of peptidase subfamily S41B; Degrades oligopeptides; Belongs to the peptidase S41B family. (1094 aa)    
Predicted Functional Partners:
SO_1699
Transmembrane transcriptional regulator.
  
     0.702
SO_4537
Serine peptidase family S9.
  
    0.652
SO_1539
Periplasmic peptidase family S9.
  
    0.618
SO_3412
Periplasmic solute binding protein.
 
 
   0.550
nlpI
Globular tetratricopeptide repeat containing lipoprotein NlpI; May be involved in cell division.
  
 
 
 0.531
SO_0735
Predicted inner membrane protein.
  
     0.495
batD
Periplasmic protein of unknown function in aerotolerance operon BatD.
  
 
 0.434
gpN
Mu phage DNA circulation protein GpN.
  
     0.414
SO_1425
Outer membrane morn variant repeat-containing protein.
  
    0.413
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.