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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SO_3411Predicted non-catalytic member of peptidase subfamily S41B; Degrades oligopeptides; Belongs to the peptidase S41B family. (1094 aa)    
Predicted Functional Partners:
SO_1699
Transmembrane transcriptional regulator.
  
     0.702
SO_4537
Serine peptidase family S9.
  
    0.652
SO_1539
Periplasmic peptidase family S9.
  
    0.618
nlpI
Globular tetratricopeptide repeat containing lipoprotein NlpI; May be involved in cell division.
  
 
 
 0.612
SO_3412
Periplasmic solute binding protein.
 
 
   0.564
SO_0735
Predicted inner membrane protein.
  
     0.495
SO_0189
Bifunctional autotransporter / adhesin cadherin family.
  
   0.487
mshQ
MshA pili-associated adhesin MshQ.
  
   0.463
amiB
N-acetylmuramoyl-L-alanine amidase AmiB.
  
  
 0.461
ftsZ
Cell division filament FtsZ; Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity.
   
 
 0.446
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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