STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
trpRTranscriptional repressor of aromatic amino acid biosynthesis TrpR. (91 aa)    
Predicted Functional Partners:
trpCF
Bifunctional indole-3-glycerolphosphate synthetase/phosphoribosylanthranilate isomerase TrpCF; Belongs to the TrpC family.
 
   
 0.771
tyrP
Tyrosine transporter TyrP.
  
   
 0.760
mtr
High affinity tryptophan transporter Mtr.
 
   
 0.757
yecM
Protein of unknown function YecM.
  
     0.735
hutC
Transcriptional repressor of histidine utilization genes HutC.
      
 0.662
SO_1074
Tyrosine transporter TyrP-like protein.
  
   
 0.627
pheA
Multifunctional chorismate mutase P/prephenate dehydratase/DAHP synthetase PheA.
     
 0.622
argR
Arginine-responsive transcriptional repressor of arginine metabolism ArgR; Regulates arginine biosynthesis genes.
  
   
 0.616
yggL
Protein of unknown function DUF469 YggL.
  
     0.605
trpD
Anthranilate phosphoribosyltransferase TrpD; Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'- phosphoribosyl)-anthranilate (PRA).
     
 0.595
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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