STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
trpRTranscriptional repressor of aromatic amino acid biosynthesis TrpR. (91 aa)    
Predicted Functional Partners:
tyrP
Tyrosine transporter TyrP.
  
   
 0.801
mtr
High affinity tryptophan transporter Mtr.
 
   
 0.770
yecM
Protein of unknown function YecM.
  
     0.735
trpCF
Bifunctional indole-3-glycerolphosphate synthetase/phosphoribosylanthranilate isomerase TrpCF; Belongs to the TrpC family.
 
   
 0.698
tyrR
Sigma54-dependent transcriptional activator of amino acid degradation TyrR.
      
 0.696
argR
Arginine-responsive transcriptional repressor of arginine metabolism ArgR; Regulates arginine biosynthesis genes.
  
   
 0.659
trpD
Anthranilate phosphoribosyltransferase TrpD; Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'- phosphoribosyl)-anthranilate (PRA).
     
 0.647
SO_1074
Tyrosine transporter TyrP-like protein.
  
   
 0.635
yggL
Protein of unknown function DUF469 YggL.
  
     0.605
SO_0564
Zinc-regulated TonB-dependent zinc receptor.
  
     0.589
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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