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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SO_3420Monoheme cytochrome c'. (149 aa)    
Predicted Functional Partners:
cytcB
Diheme cytochrome c4 CytcB.
  
  
 0.803
SO_3421
Cytochrome b561.
 
    0.785
SO_4483
Cytochrome b.
 
    0.700
omp35
Outer membrane porin Omp35.
   
  
 0.579
petC
Ubiquinol-cytochrome c reductase cytochrome c1 subunit PetC.
   
  
 0.578
ccoP
Cbb3-type cytochrome c oxidase subunit III CcoP; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex.
 
  
 0.574
SO_2726
Cytochrome b.
 
    0.566
scyA
Periplasmic monoheme cytochrome c5 ScyA.
   
  
 0.537
trpR
Transcriptional repressor of aromatic amino acid biosynthesis TrpR.
       0.501
SO_4047
SoxA-like diheme cytochrome c.
   
  
 0.489
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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