STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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[Homology]
Score
lldRTranscriptional regulator of L-lactate utilization LldR; Belongs to the LysR transcriptional regulatory family. (299 aa)    
Predicted Functional Partners:
SO_0989
Transcriptional regulator LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.772
SO_4542
Transcriptional regulator LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.768
SO_4140
Transcriptional regulator LysR family; Belongs to the LysR transcriptional regulatory family.
  
    0.763
SO_0843
Transcriptional regulator LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.757
SO_1046
Transcriptional regulator LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.744
SO_1907
Transcriptional regulator LysR family; Belongs to the LysR transcriptional regulatory family.
  
    0.744
SO_1259
Transcriptional regulator LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.713
SO_2561
Transcriptional regulator LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.709
trpI
Transcriptional activator of tryptophan biosynthesis TrpI; Belongs to the LysR transcriptional regulatory family.
  
     0.705
hmgR
Homogentisate-responsive transcriptional repressor of homogenetisate degradation HmgR; Belongs to the LysR transcriptional regulatory family.
  
     0.703
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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