STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SO_3474Metallo-beta-lactamase family protein. (299 aa)    
Predicted Functional Partners:
SO_3475
Disulfide bond formation facilitator.
    0.956
SO_0914
Beta lactamase family protein.
   
  
 0.920
SO_0541
RNA-metabolizing metallo-beta-lactamase family protein.
  
  
 0.919
SO_3054
Metallo-beta-lactamase family protein.
      
 0.916
blaA
Class D carbapenem-hydrolyzing beta-lactamase BlaA.
   
  
 0.811
ampC
Class C beta-lactamase AmpC.
   
  
 0.750
pbpG
D-alanyl-D-alanine endopeptidase PbpG; Belongs to the peptidase S11 family.
      
 0.718
dacB
D-alanyl-D-alanine carboxypeptidase DacB.
      
 0.718
SO_3473
Transcriptional regulator LysR family; Belongs to the LysR transcriptional regulatory family.
 
    0.674
SO_4624
Transcriptional regulator LuxR family.
   
 
 0.503
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.