STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SO_3475Disulfide bond formation facilitator. (221 aa)    
Predicted Functional Partners:
SO_3474
Metallo-beta-lactamase family protein.
    0.960
SO_3473
Transcriptional regulator LysR family; Belongs to the LysR transcriptional regulatory family.
 
    0.469
SO_1092
Transcriptional regulator AraC family.
  
     0.449
cyaB
Cytoplasmic adenylate cyclase CyaB.
  
     0.447
torF
TMAO reductase system outer membrane porin TorF.
   
    0.429
pssA
Phosphatidylserine synthase PssA.
  
     0.425
sufC
FeS assembly ATPase SufC.
   
    0.421
SO_2589
2OG-Fe(II) oxygenase family protein; Belongs to the iron/ascorbate-dependent oxidoreductase family.
  
     0.402
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.