Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SO_3491Cyclic di-GMP hydrolase. (422 aa)    
Predicted Functional Partners:
wbfY
Polysaccharide biosynthesis protein epimerase/dehydratase-like WbfY.
      
 0.963
exeS
Extracellular nuclease ExeS.
      
 0.830
exeM
Extracellular endonuclease ExeM.
  
   
 0.824
SO_1241
Protein of unknown function DUF1568.
   
    0.785
aggA
Type I protein secretion system secretin component AggA.
  
   
 0.727
uvrY
Two component signal transduction system response regulator UvrY.
      
 0.662
SO_1055
Diguanylate cyclase with PAS and GAF sensory domains.
 
 
 0.642
SO_3556
Diguanylate cyclase with GAF sensory domain.
 
 
 0.605
SO_0796
Diguanylate cyclase.
 
   0.602
SO_4711
Cyclic di-GMP hydrolase.
  
  
0.586
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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