Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
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[Homology]
Score
SO_3501Protein of unknown function DUF861. (124 aa)    
Predicted Functional Partners:
SO_1260
Extracellular solute-binding protein family 3.
  
    0.828
SO_1264
FAD-dependent oxidoreductase.
 
    0.528
hcr
NADH oxidoreductase Hcr.
 
    0.528
puuB
Gamma-glutamylputrescine oxidoreductase PuuB.
 
    0.520
SO_3502
TIGR02001 family outer membrane protein.
  
    0.517
SO_2052
FAD-dependent oxidoreductase.
 
    0.497
aguB
N-carbamoyl-putrescine amidase AguB.
  
    0.462
SO_1064
WD-40 repeat lipoprotein.
  
    0.454
hutD
Putative histidine degradation protein HutD.
  
    0.431
SO_3678
FAD-dependent oxidoreductase.
 
    0.409
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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