Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Gene Fusion
Co-occurrence
Co-expression
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[Homology]
Score
SO_3512SapC family protein. (229 aa)    
Predicted Functional Partners:
SO_3513
Flavin-dependent tryptophan halogenase.
 
     0.912
SO_3514
TonB-dependent chitooligosaccharide receptor.
 
     0.852
SO_0547
Putative outer membrane protein TIGR02001 family.
  
     0.667
SO_3502
TIGR02001 family outer membrane protein.
  
     0.651
nagR
Transcriptional repressor of N-acetylglucosamine utilization NagR.
  
    0.524
malR
Transcriptional repressor of maltodextrose utilization MalR.
  
     0.514
SO_1190
Putative periplasmic CbiK superfamily protein.
  
     0.504
malT
Putative maltose transporter MalT.
  
     0.485
susB
Alpha-glucosidase SusB.
  
     0.473
SO_2523
TonB-dependent phytase receptor.
  
     0.467
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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