STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SO_3513Flavin-dependent tryptophan halogenase. (507 aa)    
Predicted Functional Partners:
SO_3512
SapC family protein.
 
     0.913
SO_3514
TonB-dependent chitooligosaccharide receptor.
 
     0.888
SO_1411
Predicted outer membrane protein.
  
    0.822
malR
Transcriptional repressor of maltodextrose utilization MalR.
  
    0.717
malT
Putative maltose transporter MalT.
 
    0.715
etfB
Electron transfer flavoprotein beta subunit EtfB.
  
 
 0.703
nagR
Transcriptional repressor of N-acetylglucosamine utilization NagR.
  
     0.676
etfQ
Electron transfer flavoprotein-ubiquinone oxidoreductase EtfQ; Accepts electrons from ETF and reduces ubiquinone.
  
 
 0.663
cga
Glucan 14-alpha-glucosidase Cga.
 
     0.632
susB
Alpha-glucosidase SusB.
  
     0.615
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.