STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SO_3513Flavin-dependent tryptophan halogenase. (507 aa)    
Predicted Functional Partners:
SO_3512
SapC family protein.
 
     0.912
SO_3514
TonB-dependent chitooligosaccharide receptor.
 
     0.887
SO_1411
Predicted outer membrane protein.
  
    0.815
etfB
Electron transfer flavoprotein beta subunit EtfB.
  
 
 0.742
malR
Transcriptional repressor of maltodextrose utilization MalR.
  
     0.716
etfQ
Electron transfer flavoprotein-ubiquinone oxidoreductase EtfQ; Accepts electrons from ETF and reduces ubiquinone.
  
 
 0.707
malT
Putative maltose transporter MalT.
 
    0.702
nagR
Transcriptional repressor of N-acetylglucosamine utilization NagR.
  
     0.676
cga
Glucan 14-alpha-glucosidase Cga.
 
     0.633
susB
Alpha-glucosidase SusB.
  
     0.615
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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