Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
SO_3514TonB-dependent chitooligosaccharide receptor. (874 aa)    
Predicted Functional Partners:
nagP
N-acetyl glucosamine transporter NagP.
 
  
 0.892
SO_3513
Flavin-dependent tryptophan halogenase.
 
     0.887
nagR
Transcriptional repressor of N-acetylglucosamine utilization NagR.
 
  
 0.883
SO_3512
SapC family protein.
 
     0.852
phyS
Beta-propeller phytase PhyS.
 
    0.761
SO_0854
PilD processed protein.
      
 0.738
malT
Putative maltose transporter MalT.
 
     0.684
malR
Transcriptional repressor of maltodextrose utilization MalR.
 
     0.670
nagK
N-acetylglucosamine kinase NagK.
  
    0.656
SO_1190
Putative periplasmic CbiK superfamily protein.
 
     0.640
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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