Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
fimUType IV pilus biogenesis protein FimU. (164 aa)    
Predicted Functional Partners:
pilV
Type IV pilin modification protein PilV.
 
  
 0.970
pilW
Type IV minor pilin protein PilW.
 
  
 0.911
pilX
Type IV minor pilin protein PilX.
  
  
 0.876
pilY
Type IV pili system adhesin PilY.
 
  
 0.855
pilE
Type IV minor pilin protein PilE.
 
  
 0.832
gspH
T2aSS secretion system pseudopilus protein GspH.
     
 0.805
pilO
Type IV pilus biogenesis protein PilO.
 
  
 0.804
pilP
PilQ chaperone PilP.
  
  
 0.774
pilN
Type IV pilus biogenesis protein PilN.
 
  
 0.773
SO_0853
PilD processed protein.
 
     0.711
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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