STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fimUType IV pilus biogenesis protein FimU. (164 aa)    
Predicted Functional Partners:
pilV
Type IV pilin modification protein PilV.
 
  
 0.943
pilW
Type IV minor pilin protein PilW.
 
  
 0.900
pilY
Type IV pili system adhesin PilY.
 
  
 0.800
pilX
Type IV minor pilin protein PilX.
  
  
 0.798
pilO
Type IV pilus biogenesis protein PilO.
 
  
 0.778
pilP
PilQ chaperone PilP.
  
  
 0.767
pilE
Type IV minor pilin protein PilE.
 
  
 0.757
pilN
Type IV pilus biogenesis protein PilN.
 
  
 0.752
mshB
MSHA minor pilin protein MshB.
  
  
 0.728
SO_0853
PilD processed protein.
 
     0.713
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.